Search Cottages in San Juan Island

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Check prices for these dates

Next weekend
4 Rab. II - 6 Rab. II
In two weeks
11 Rab. II - 13 Rab. II
In one month
25 Rab. II - 27 Rab. II
In two months
23 Jum. I - 25 Jum. I

Compare 58 Cottages in San Juan Island with updated reviews, rates, and availability.

Waterfront cabin with hot tub, WiFi, deck, & wildlife views - dog-friendly
Aerial view

Waterfront cabin with hot tub, WiFi, deck, & wildlife views - dog-friendly

9.8 out of 10, Exceptional, (117)
"We had a sibling reunion and the cabin worked beautifully for four couples. Kitchen was cozy but the bedrooms (especially upstairs) were spacious and comfortable. We’d stay here again!"
Waterfront cabin with hot tub, WiFi, deck, & wildlife views - dog-friendly
Lovely water and garden views. Two minutes drive to beaches, six to either town!
Property grounds

Lovely water and garden views. Two minutes drive to beaches, six to either town!

10.0 out of 10, Exceptional, (43)
"We loved this little cottage for her birthday! The hosts are wonderful and you can’t beat the views! We would go back!"
Lovely water and garden views. Two minutes drive to beaches, six to either town!
Cottage by the Sea Su
View from property

Cottage by the Sea Su

9.6 out of 10, Exceptional, (132)
"Cute comfortable cottage with beautiful view. We were so busy hiking and enjoying the surrounding towns we didn’t have enough time to truly take advantage of the wonderful outdoor space of the cottage. You could sit outside and take in the sea view all day!"
The price is SAR 491
SAR 895 total
includes taxes & fees
27 Mar - 28 Mar
Cottage by the Sea Su
Waterfront Beach House close to everything!
Dining

Waterfront Beach House close to everything!

10.0 out of 10, Exceptional, (218)
"My wife and I had a wonderful stay. The view is fantastic. I could sit and look out the window all day long, as the scenery is always changing. Mt. Baker and the Sisters came out beautifully on our last day. The sunrise is spectacular, and it is somehow comforting (I don't know why) to see the reliable Whatcom Chief crossing back and forth. The only slight snag was when the fireplace pilot went out due to a very windy few hours. I texted the host and she got back to me immediately with...
Waterfront Beach House close to everything!
Waterfront cottage with tidelands, creek and waterfall!
Outdoor dining

Waterfront cottage with tidelands, creek and waterfall!

9.8 out of 10, Exceptional, (7)
"Perfect home for a relaxing stay. The view from the living room is story book."
The price is SAR 1,857
SAR 3,225 total
includes taxes & fees
31 Mar - 1 Apr
Waterfront cottage with tidelands, creek and waterfall!
Dog-Friendly Cottage with hot tub, kayaks, e-bike
Beach nearby

Dog-Friendly Cottage with hot tub, kayaks, e-bike

10.0 out of 10, Exceptional, (22)
"The host was very responsive, helpful, and accommodating. We were allowed a later check-out since no other guests were coming in that day, which was perfect for our schedule. The set-up worked great for us with our adult children along and everyone had space to spread out. It's very centrally located on the island for all the day trips we had planned and we enjoyed having the hot tub to soak in after a day of hiking. "
Dog-Friendly Cottage with hot tub, kayaks, e-bike
Cute, Cozy & Comfortable Cottage Conveniently Located In The Heart Of Town.
Fridge, microwave, oven, stovetop

Cute, Cozy & Comfortable Cottage Conveniently Located In The Heart Of Town.

10.0 out of 10, Exceptional, (87)
"It was a lovely time. The cottage had everything we needed. And it was very clean, warm and cozy."
Cute, Cozy & Comfortable Cottage Conveniently Located In The Heart Of Town.
Beachfront cottage on Buoy Bay w/ beach access & boat moor
Aerial view

Beachfront cottage on Buoy Bay w/ beach access & boat moor

9.8 out of 10, Exceptional, (101)
"Super sweet views of the water, islands, & sky. Very nice private beach, and peaceful setting. The kitchen is well equipped. Bed was comfortable, couch and chairs were comfortable. The code to the door didn’t work, and after trying it numerous times, we texted Vacasa and they responded with a different code for the lock box which got us in with a key. The light above the stove, under the microwave was burned out, so cooking was dimly lit. I’m sure they will replace the bulb tho. The coffee...
Beachfront cottage on Buoy Bay w/ beach access & boat moor
Orcas Island, Paris Cottage #213
Interior

Orcas Island, Paris Cottage #213

9.6 out of 10, Exceptional, (111)
"Nice stay. Kept warm and view of bay was lovely. Appliances were of high quality and appeared new. I had difficulty with the bathroom sink drain. I enjoyed exploring Orcas Island. Felt like I was integrated into the community. No other rentals in view. Bathroom had the feel of a boats head. Everything was there but it was tight. If owner is interested I do fine pruning and would be interested in taking on the care of your plants. Hot tub was glorious!"
Orcas Island, Paris Cottage #213
A Charming And Artistic Cottage Set In a Beautiful Garden
Fridge, microwave, oven, stovetop

A Charming And Artistic Cottage Set In a Beautiful Garden

9.8 out of 10, Exceptional, (176)
"The Foxglove Cottage is delightful. Beautiful setting, cozy and whimsical. Morning walks in the gardens and snug evenings around the fireplace in the quaint living room. The kitchen is well appointed and beds comfortable. Delightful stay!"
A Charming And Artistic Cottage Set In a Beautiful Garden
Stunning waterfront 4BR home with fantastic views, manicured garden, & firepit
Interior

Stunning waterfront 4BR home with fantastic views, manicured garden, & firepit

9.6 out of 10, Exceptional, (77)
"Nice property! Had a great time. Well appointed with everything you need! Didn’t get check in instructions until day before. Other than that would rent again!Thank you!"
Stunning waterfront 4BR home with fantastic views, manicured garden, & firepit
Cozy cottage, outdoor space & convenient location
Fridge, microwave, oven, stovetop

Cozy cottage, outdoor space & convenient location

9.6 out of 10, Exceptional, (45)
"This cottage is completely remodeled and very clean, comfortable, cozy, and private. The walkability to downtown Anacortes shops is definitely a bonus too! "
The price is SAR 334
SAR 1,189 total
includes taxes & fees
31 Mar - 1 Apr
Cozy cottage, outdoor space & convenient location
WATER VIEWS of Puget Sound and the Olympic Mountains in a Garden Setting
Exterior detail

WATER VIEWS of Puget Sound and the Olympic Mountains in a Garden Setting

10.0 out of 10, Exceptional, (198)
"The cottage was the perfect place for a wonderful get away on San Juan Island. Mary is a very creative artist and has decorated the cottage beautifully and provided absolutely everything we needed for our stay. The gardens are filled with fantastic flowers and the patio and view are a great place to enjoy meals. We hope to return soon!"
WATER VIEWS of Puget Sound and the Olympic Mountains in a Garden Setting
The Little Pink House by Avantstay Water Views
Interior

The Little Pink House by Avantstay Water Views

3.0 star property
10.0 out of 10, Exceptional, (2)
"Perfect for a short weekend with family "
The Little Pink House by Avantstay Water Views
5⭐Sunset Beach Haven; Seriously Waterfront-"It's Like Living on a Boat", Whidbey
Interior

5⭐Sunset Beach Haven; Seriously Waterfront-"It's Like Living on a Boat", Whidbey

10.0 out of 10, Exceptional, (206)
"Julie and Peter’s place is the perfect get away! Close to many local attractions to keep you entertained but beautiful and quiet for a cozy stay in. Truly paradise."
5⭐Sunset Beach Haven; Seriously Waterfront-"It's Like Living on a Boat", Whidbey
San Juan Island, Captains Cottage #101
Beach

San Juan Island, Captains Cottage #101

10.0 out of 10, Exceptional, (67)
"Lovely property and neighborhood. Had extras like spices and coffee. Spotlessly clean and cared for. Quick response when we texted a question. All the comforts of home in a magically beautiful setting. "
San Juan Island, Captains Cottage #101
Bayside! - Spectacular views of the marina; Walk to Rosario Resort for dinner!
Marina

Bayside! - Spectacular views of the marina; Walk to Rosario Resort for dinner!

10.0 out of 10, Exceptional, (13)
"Great views in a quiet, clean house. Perfect!"
Bayside! - Spectacular views of the marina; Walk to Rosario Resort for dinner!
Penn Cove Overlook by Avantstay Cabin w/ Views
Interior

Penn Cove Overlook by Avantstay Cabin w/ Views

3.0 star property
10.0 out of 10, Exceptional, (1)
"Really loved how private and quiet it was. It was so cute and comfortable. Would love to go back and stay longer."
Penn Cove Overlook by Avantstay Cabin w/ Views
Chef's Kitchen, Salish Sea View, EV Charger: This is The Cottage on Cedar Street
Property grounds

Chef's Kitchen, Salish Sea View, EV Charger: This is The Cottage on Cedar Street

10.0 out of 10, Exceptional, (40)
"We very much enjoyed our stay in this beautiful home. The checkin process was simple and communicated well in advance. The home itself is absolutely lovely, with thoughtful touches throughout. The upstairs deck provides great views and was our favorite breakfast spot. The kitchen was well appointed and just as nice as the pictures show. The two bedrooms were very comfortable, and the bathroom was modern and well stocked with toiletry supplies if needed. The property itself is spacious and...
Chef's Kitchen, Salish Sea View, EV Charger: This is The Cottage on Cedar Street
Here's a perfect spot to kick back, relax and watch the day cruise by
Interior

Here's a perfect spot to kick back, relax and watch the day cruise by

9.6 out of 10, Exceptional, (38)
"Great spot. Easy to get a hold of property manager. "
Here's a perfect spot to kick back, relax and watch the day cruise by
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
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Other property types in San Juan Island

Waterfront Home! Hot Tub! (HOS)
Smart TV, fireplace, books, smart speakers

Waterfront Home! Hot Tub! (HOS)

9.8 out of 10, Exceptional, (47)
"Put this on your bucket list! While everyone stages their property for the photos, this may be the one property that is anti-staged! The House of the Ocean Sun absolutely exceeds the amazing pictures and write-up in every way. Views are epic. The property is immaculately maintained and the kitchen is fully equipped—it even has an espresso machine that converted us away from pods. This beautiful property made a very special trip for us worry free. Thank you to the hosts for making...
Waterfront Home! Hot Tub! (HOS)
Westcott Bay Waterfront pet friendly home. just minutes from Roche Harbor.
Exterior

Westcott Bay Waterfront pet friendly home. just minutes from Roche Harbor.

10.0 out of 10, Exceptional, (322)
"Beautiful property. The privacy is exceptional and the home gorgeous. We enjoyed it all - thank you!"
Westcott Bay Waterfront pet friendly home. just minutes from Roche Harbor.
Waterfront! Hot Tub! (EWR)
Exterior

Waterfront! Hot Tub! (EWR)

10.0 out of 10, Exceptional, (67)
"Tongue and grooved knotty pine, Leathered granite counters, views of the water from every angle. High end amenities, a perfect place to unwind. High end flooring throughout with heated tile floors in the bathrooms and utility/wash room. An amazing place to stay on San Juan, perfectly situated between Friday harbor and Roche harbor. Orcas, sea lions and coast guard were plentiful for viewing from the two different balcony style decks. What a treat!"
Waterfront! Hot Tub! (EWR)
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Frequently asked questions

Why book your cottage in San Juan Island with Expedia?
Expedia has some excellent cottages in San Juan Island, so get ready for a memorable vacay close to nature. If you have a set budget, select how much you’re willing to spend and the star rating of your property. Or, use our filters to search for cottages with a hot tub or free WiFi. We’ll help you find the perfect place whatever your plans or style of travel.
How can I find cheap cottages in San Juan Island?
Expedia can help you locate cheap cottages in San Juan Island. To book your dream stay in a few clicks, simply use the filter tool to refine your search by star rating, budget and amenities.